GADMA

User documentation

  • Installation
  • Hands on
  • User manual
  • Example parameters file
  • Examples
  • FAQ
  • Getting help

Development documentation

  • API
    • Inference module
    • Data (data package)
    • Models (models package)
    • Engines (engines package)
    • Code generation (code_generator package)
    • Optimizers (optimizers package)
    • Command line interface (cli package)
    • Core of runs (core package)
    • Utils and variables (utils package)
    • Run local search on bootstrap
GADMA
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APIΒΆ

  • Inference module
  • Data (data package)
    • Base class of DataHolder
    • Input data types
  • Models (models package)
    • Base class Model
    • Combinations of variables
      • Base class VariablesCombination
      • Base class BinaryOperation
      • Classes of different binary operations
    • Events
    • Demographic models
      • Base class DemographicModel
      • Class EpochDemographicModel
      • Class StructureDemographicModel
      • Class CustomDemographicModel
  • Engines (engines package)
    • Base class Engine
    • Class DadiOrMomentsEngine
    • Dadi engine
    • Moments engine
  • Code generation (code_generator package)
    • Generator of dadi code
    • Generator of moments code
  • Optimizers (optimizers package)
    • Base Classes
    • Global optimizers
      • Registered global optimizers
      • Genetic algorithm
      • Bayesian optimization
    • Local optimizers
      • Registered local optimizers
    • Combinations of optimizers
    • Optimizer result
    • Linear constrain
  • Command line interface (cli package)
    • Argument parsing
    • SettingsStorage
  • Core of runs (core package)
    • CoreRun
    • SharedDict
    • Core
    • Functions for drawing and code generation in main function of core
  • Utils and variables (utils package)
    • Variables
    • Variable Pool
    • Distributions
    • Utils
  • Run local search on bootstrap
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