GADMA
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B
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C
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D
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E
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F
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G
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H
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I
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J
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L
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M
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N
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O
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P
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R
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S
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T
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U
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V
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W
A
A() (gadma.optimizers.linear_constrain.LinearConstrain property)
abspath() (in module gadma.utils.utils)
add_epoch() (gadma.models.demographic_model.EpochDemographicModel method)
add_model_for_process() (gadma.core.shared_dict.SharedDict method)
(gadma.core.shared_dict.SharedDictForCoreRun method)
add_split() (gadma.models.demographic_model.EpochDemographicModel method)
add_variable() (gadma.models.model.Model method)
add_variables() (gadma.models.model.Model method)
Addition (class in gadma.models.variables_combinations)
all_engines() (in module gadma.engines.engine)
all_global_optimizers() (in module gadma.optimizers.global_optimizer)
all_local_optimizers() (in module gadma.optimizers.local_optimizer)
append() (gadma.utils.variable_pool.VariablePool method)
ArgParser (class in gadma.cli.arg_parser)
as_custom_string() (gadma.models.demographic_model.DemographicModel method)
(gadma.models.demographic_model.EpochDemographicModel method)
(gadma.models.event.Epoch method)
(gadma.models.event.Event method)
(gadma.models.event.Split method)
B
base_callback() (gadma.core.core_run.CoreRun method)
base_module (gadma.engines.dadi_engine.DadiEngine attribute)
(gadma.engines.dadi_moments_common.DadiOrMomentsEngine attribute)
(gadma.engines.moments_engine.MomentsEngine attribute)
BayesianOptimizer (class in gadma.optimizers.bayesian_optimization)
bcolors (class in gadma.utils.utils)
BinaryOperation (class in gadma.models.variables_combinations)
BOLD (gadma.utils.utils.bcolors attribute)
bootstrap_data() (gadma.cli.settings_storage.SettingsStorage property)
C
cache_func() (in module gadma.utils.utils)
CacheInfo (class in gadma.utils.utils)
callback() (gadma.core.core_run.CoreRun method)
check_dir_existence() (in module gadma.utils.utils)
check_file_existence() (in module gadma.utils.utils)
check_type() (gadma.utils.variable_pool.VariablePool method)
check_variables() (gadma.optimizers.optimizer.ConstrainedOptimizer method)
(gadma.optimizers.optimizer.ContinuousOptimizer method)
(gadma.optimizers.optimizer.Optimizer method)
(gadma.optimizers.optimizer.UnconstrainedOptimizer method)
check_x() (gadma.optimizers.genetic_algorithm.GeneticAlgorithm method)
choose_by_weight() (in module gadma.utils.utils)
code_iter_callback() (gadma.core.core_run.CoreRun method)
ConstrainedOptimizer (class in gadma.optimizers.optimizer)
construct_model() (gadma.core.shared_dict.SharedDictForCoreRun method)
ContinuousOptimizer (class in gadma.optimizers.optimizer)
ContinuousVariable (class in gadma.utils.variables)
CoreRun (class in gadma.core.core_run)
correct_value() (gadma.utils.variables.ContinuousVariable method)
(gadma.utils.variables.DiscreteVariable method)
(gadma.utils.variables.Variable method)
crossover() (gadma.optimizers.genetic_algorithm.GeneticAlgorithm method)
custom_generator() (in module gadma.utils.distributions)
CustomDemographicModel (class in gadma.models.custom_demographic_model)
D
DadiEngine (class in gadma.engines.dadi_engine)
DadiOrMomentsEngine (class in gadma.engines.dadi_moments_common)
data() (gadma.core.core_run.CoreRun property)
(gadma.engines.engine.Engine property)
DataHolder (class in gadma.data.data)
default_domain (gadma.utils.variables.ContinuousVariable attribute)
(gadma.utils.variables.DiscreteVariable attribute)
(gadma.utils.variables.DynamicVariable attribute)
(gadma.utils.variables.FractionVariable attribute)
(gadma.utils.variables.MigrationVariable attribute)
(gadma.utils.variables.PopulationSizeVariable attribute)
(gadma.utils.variables.SelectionVariable attribute)
(gadma.utils.variables.TimeVariable attribute)
default_dt_fac (gadma.engines.moments_engine.MomentsEngine attribute)
default_key() (gadma.core.shared_dict.SharedDict method)
(gadma.core.shared_dict.SharedDictForCoreRun method)
default_rand_gen() (gadma.utils.variables.ContinuousVariable method)
(gadma.utils.variables.DiscreteVariable method)
(gadma.utils.variables.DynamicVariable method)
(gadma.utils.variables.FractionVariable method)
(gadma.utils.variables.MigrationVariable method)
(gadma.utils.variables.PopulationSizeVariable method)
(gadma.utils.variables.SelectionVariable method)
(gadma.utils.variables.TimeVariable method)
DemographicModel (class in gadma.models.demographic_model)
DiscreteVariable (class in gadma.utils.variables)
Division (class in gadma.models.variables_combinations)
domain() (gadma.utils.variables.DiscreteVariable property)
draw_iter_callback() (gadma.core.core_run.CoreRun method)
draw_model_in_output_dir() (gadma.core.core_run.CoreRun method)
draw_plots_to_file() (in module gadma.core.draw_and_generate_code)
draw_schematic_model_plot() (gadma.engines.dadi_engine.DadiEngine method)
(gadma.engines.moments_engine.MomentsEngine method)
draw_sfs_plots() (gadma.engines.dadi_moments_common.DadiOrMomentsEngine method)
Dynamic (class in gadma.utils.variables)
DynamicVariable (class in gadma.utils.variables)
E
ENDC (gadma.utils.utils.bcolors attribute)
Engine (class in gadma.engines.engine)
ensure_dir_existence() (in module gadma.utils.utils)
ensure_file_existence() (in module gadma.utils.utils)
Epoch (class in gadma.models.event)
EpochDemographicModel (class in gadma.models.demographic_model)
EVAL_FILENAME (gadma.core.core_run.CoreRun attribute)
eval_wrapper() (in module gadma.utils.utils)
evaluate() (gadma.engines.dadi_engine.DadiEngine method)
(gadma.engines.dadi_moments_common.DadiOrMomentsEngine method)
(gadma.engines.engine.Engine method)
(gadma.engines.moments_engine.MomentsEngine method)
(gadma.optimizers.optimizer.Optimizer method)
evaluate_inner() (gadma.optimizers.local_optimizer.ManuallyConstrOptimizer method)
Event (class in gadma.models.event)
Exp (class in gadma.utils.variables)
exponent_transform() (in module gadma.utils.utils)
extend() (gadma.utils.variable_pool.VariablePool method)
F
FAIL (gadma.utils.utils.bcolors attribute)
fits() (gadma.optimizers.linear_constrain.LinearConstrain method)
fix_args() (in module gadma.utils.utils)
fix_dynamics() (gadma.models.demographic_model.EpochDemographicModel method)
fix_pickling() (gadma.utils.variable_pool.VariablePool method)
fix_variable() (gadma.models.demographic_model.EpochDemographicModel method)
(gadma.models.model.Model method)
float_repr() (in module gadma.utils.utils)
flush() (gadma.utils.utils.StdAndFileLogger method)
format_help() (gadma.cli.arg_parser.ArgParser method)
format_str (gadma.utils.variables.Dynamic attribute)
(gadma.utils.variables.Exp attribute)
(gadma.utils.variables.Lin attribute)
(gadma.utils.variables.Sud attribute)
fractions() (gadma.cli.settings_storage.SettingsStorage property)
FractionVariable (class in gadma.utils.variables)
from_file() (gadma.cli.settings_storage.SettingsStorage static method)
from_GPyOpt_OptimizerResult() (gadma.optimizers.optimizer_result.OptimizerResult static method)
from_SciPy_OptimizeResult() (gadma.optimizers.optimizer_result.OptimizerResult static method)
from_structure() (gadma.models.structure_demographic_model.StructureDemographicModel method)
func_str() (gadma.utils.variables.Dynamic class method)
G
gadma.cli.arg_parser
module
gadma.cli.settings_storage
module
gadma.code_generator.dadi_generator
module
gadma.code_generator.moments_generator
module
gadma.core.core
module
gadma.core.core_run
module
gadma.core.draw_and_generate_code
module
gadma.core.shared_dict
module
gadma.data.data
module
gadma.engines.dadi_engine
module
gadma.engines.dadi_moments_common
module
gadma.engines.engine
module
gadma.engines.moments_engine
module
gadma.Inference
module
gadma.models.custom_demographic_model
module
gadma.models.demographic_model
module
,
[1]
gadma.models.event
module
gadma.models.model
module
gadma.models.structure_demographic_model
module
gadma.models.variables_combinations
module
gadma.optimizers.bayesian_optimization
module
gadma.optimizers.combinations
module
gadma.optimizers.genetic_algorithm
module
gadma.optimizers.global_optimizer
module
gadma.optimizers.linear_constrain
module
gadma.optimizers.local_optimizer
module
gadma.optimizers.optimizer
module
gadma.optimizers.optimizer_result
module
gadma.run_ls_on_boot_data
module
gadma.utils.distributions
module
gadma.utils.utils
module
gadma.utils.variable_pool
module
gadma.utils.variables
module
generate_code() (gadma.engines.dadi_engine.DadiEngine method)
(gadma.engines.dadi_moments_common.DadiOrMomentsEngine method)
(gadma.engines.engine.Engine method)
(gadma.engines.moments_engine.MomentsEngine method)
generate_code_to_file() (in module gadma.core.draw_and_generate_code)
GeneticAlgorithm (class in gadma.optimizers.genetic_algorithm)
get_addit_scipy_kwargs() (gadma.optimizers.local_optimizer.ScipyConstrOptimizer method)
(gadma.optimizers.local_optimizer.ScipyOptimizer method)
(gadma.optimizers.local_optimizer.ScipyUnconstrOptimizer method)
get_aic_score() (in module gadma.utils.utils)
get_available_groups() (gadma.core.shared_dict.SharedDict method)
get_best_model_for_process_in_group() (gadma.core.shared_dict.SharedDict method)
get_best_model_in_group() (gadma.core.shared_dict.SharedDict method)
get_bounds() (gadma.utils.variables.ContinuousVariable method)
(gadma.utils.variables.DiscreteVariable method)
(gadma.utils.variables.DynamicVariable method)
(gadma.utils.variables.Variable method)
get_claic_component() (gadma.engines.dadi_moments_common.DadiOrMomentsEngine method)
get_claic_score() (in module gadma.Inference)
(in module gadma.utils.utils)
get_domain() (gadma.optimizers.bayesian_optimization.BayesianOptimizer method)
get_engine() (in module gadma.engines.engine)
get_engine_args() (gadma.cli.settings_storage.SettingsStorage method)
get_func_from_value() (gadma.utils.variables.DynamicVariable static method)
get_global_optimizer() (gadma.cli.settings_storage.SettingsStorage method)
(in module gadma.optimizers.global_optimizer)
get_involved_for_split_time_vars() (gadma.models.demographic_model.EpochDemographicModel method)
get_kernel() (gadma.optimizers.bayesian_optimization.BayesianOptimizer method)
get_linear_constrain_for_model() (gadma.cli.settings_storage.SettingsStorage method)
get_local_optimizer() (gadma.cli.settings_storage.SettingsStorage method)
(in module gadma.optimizers.local_optimizer)
get_model() (gadma.cli.settings_storage.SettingsStorage method)
get_models_for_process_in_group() (gadma.core.shared_dict.SharedDict method)
get_models_in_group() (gadma.core.shared_dict.SharedDict method)
(gadma.core.shared_dict.SharedDictForCoreRun method)
get_N_ancestral() (gadma.engines.dadi_moments_common.DadiOrMomentsEngine method)
get_N_ancestral_from_theta() (gadma.engines.dadi_moments_common.DadiOrMomentsEngine method)
get_number_of_parameters() (gadma.models.demographic_model.DemographicModel method)
(gadma.models.demographic_model.EpochDemographicModel method)
get_optimizers_init_kwargs() (gadma.cli.settings_storage.SettingsStorage method)
get_optimizers_kwargs() (gadma.cli.settings_storage.SettingsStorage method)
get_possible_values() (gadma.utils.variables.ContinuousVariable method)
(gadma.utils.variables.DiscreteVariable method)
(gadma.utils.variables.Variable method)
get_run_options() (gadma.core.core_run.CoreRun method)
get_save_file() (gadma.core.core_run.CoreRun method)
get_settings() (in module gadma.cli.arg_parser)
get_structure() (gadma.models.structure_demographic_model.StructureDemographicModel method)
get_theta() (gadma.engines.dadi_engine.DadiEngine method)
(gadma.engines.dadi_moments_common.DadiOrMomentsEngine method)
(gadma.engines.moments_engine.MomentsEngine method)
get_value() (gadma.core.shared_dict.SharedDict static method)
(gadma.models.variables_combinations.BinaryOperation method)
get_value_from_var2value() (gadma.engines.engine.Engine static method)
get_variable() (gadma.models.model.Model method)
get_vars_not_in_init_args() (gadma.models.event.Epoch method)
GlobalOptimizer (class in gadma.optimizers.global_optimizer)
GlobalOptimizerAndLocalOptimizer (class in gadma.optimizers.combinations)
gpyopt_inv_transform() (gadma.optimizers.bayesian_optimization.BayesianOptimizer method)
gpyopt_transform() (gadma.optimizers.bayesian_optimization.BayesianOptimizer method)
H
HEADER (gadma.utils.utils.bcolors attribute)
I
id (gadma.engines.dadi_engine.DadiEngine attribute)
(gadma.engines.dadi_moments_common.DadiOrMomentsEngine attribute)
(gadma.engines.engine.Engine attribute)
(gadma.engines.moments_engine.MomentsEngine attribute)
(gadma.optimizers.bayesian_optimization.BayesianOptimizer attribute)
(gadma.optimizers.genetic_algorithm.GeneticAlgorithm attribute)
id() (gadma.optimizers.local_optimizer.ManuallyConstrOptimizer property)
ident_transform() (in module gadma.utils.utils)
increase_structure() (gadma.models.structure_demographic_model.StructureDemographicModel method)
initial_design() (gadma.optimizers.global_optimizer.GlobalOptimizer method)
inner_data() (gadma.cli.settings_storage.SettingsStorage property)
inner_data_type (gadma.engines.dadi_engine.DadiEngine attribute)
(gadma.engines.dadi_moments_common.DadiOrMomentsEngine attribute)
(gadma.engines.engine.Engine attribute)
(gadma.engines.moments_engine.MomentsEngine attribute)
intermediate_callback() (gadma.core.core_run.CoreRun method)
is_stopped() (gadma.optimizers.genetic_algorithm.GeneticAlgorithm method)
J
job() (in module gadma.core.core)
L
lb() (gadma.optimizers.linear_constrain.LinearConstrain property)
Lin (class in gadma.utils.variables)
LinearConstrain (class in gadma.optimizers.linear_constrain)
list_with_weights_after_pickle() (in module gadma.utils.utils)
list_with_weights_for_pickle() (in module gadma.utils.utils)
load() (gadma.optimizers.genetic_algorithm.GeneticAlgorithm method)
(gadma.optimizers.optimizer.Optimizer method)
load_data_from_dir() (in module gadma.Inference)
load_module() (in module gadma.run_ls_on_boot_data)
load_parameters_from_python_file() (in module gadma.run_ls_on_boot_data)
LocalOptimizer (class in gadma.optimizers.local_optimizer)
log_transform() (gadma.optimizers.optimizer.Optimizer property)
logarithm_transform() (in module gadma.utils.utils)
lru_cache() (in module gadma.utils.utils)
M
main() (in module gadma.core.core)
(in module gadma.run_ls_on_boot_data)
ManuallyConstrOptimizer (class in gadma.optimizers.local_optimizer)
maxeval_kwarg (gadma.optimizers.local_optimizer.ScipyConstrOptimizer attribute)
(gadma.optimizers.local_optimizer.ScipyOptimizer attribute)
(gadma.optimizers.local_optimizer.ScipyUnconstrOptimizer attribute)
maximize() (gadma.optimizers.local_optimizer.ManuallyConstrOptimizer property)
MigrationVariable (class in gadma.utils.variables)
Model (class in gadma.models.model)
model() (gadma.core.core_run.CoreRun property)
(gadma.engines.engine.Engine property)
module
gadma.cli.arg_parser
gadma.cli.settings_storage
gadma.code_generator.dadi_generator
gadma.code_generator.moments_generator
gadma.core.core
gadma.core.core_run
gadma.core.draw_and_generate_code
gadma.core.shared_dict
gadma.data.data
gadma.engines.dadi_engine
gadma.engines.dadi_moments_common
gadma.engines.engine
gadma.engines.moments_engine
gadma.Inference
gadma.models.custom_demographic_model
gadma.models.demographic_model
,
[1]
gadma.models.event
gadma.models.model
gadma.models.structure_demographic_model
gadma.models.variables_combinations
gadma.optimizers.bayesian_optimization
gadma.optimizers.combinations
gadma.optimizers.genetic_algorithm
gadma.optimizers.global_optimizer
gadma.optimizers.linear_constrain
gadma.optimizers.local_optimizer
gadma.optimizers.optimizer
gadma.optimizers.optimizer_result
gadma.run_ls_on_boot_data
gadma.utils.distributions
gadma.utils.utils
gadma.utils.variable_pool
gadma.utils.variables
MomentsEngine (class in gadma.engines.moments_engine)
Multiplication (class in gadma.models.variables_combinations)
mutation() (gadma.optimizers.genetic_algorithm.GeneticAlgorithm method)
mutation_by_ind() (gadma.optimizers.genetic_algorithm.GeneticAlgorithm method)
my_dot() (in module gadma.optimizers.linear_constrain)
N
name() (gadma.models.variables_combinations.BinaryOperation property)
nan_fval_to_inf() (in module gadma.utils.utils)
NoneOptimizer (class in gadma.optimizers.local_optimizer)
number_of_populations() (gadma.models.demographic_model.EpochDemographicModel method)
O
OKBLUE (gadma.utils.utils.bcolors attribute)
OKGREEN (gadma.utils.utils.bcolors attribute)
operation() (gadma.models.variables_combinations.Addition method)
(gadma.models.variables_combinations.BinaryOperation method)
(gadma.models.variables_combinations.Division method)
(gadma.models.variables_combinations.Multiplication method)
(gadma.models.variables_combinations.Subtraction method)
operation_str() (gadma.models.variables_combinations.Addition method)
(gadma.models.variables_combinations.BinaryOperation method)
(gadma.models.variables_combinations.Division method)
(gadma.models.variables_combinations.Multiplication method)
(gadma.models.variables_combinations.Subtraction method)
opt_type (gadma.optimizers.local_optimizer.ScipyConstrOptimizer attribute)
(gadma.optimizers.local_optimizer.ScipyOptimizer attribute)
(gadma.optimizers.local_optimizer.ScipyUnconstrOptimizer attribute)
optimize() (gadma.optimizers.bayesian_optimization.BayesianOptimizer method)
(gadma.optimizers.combinations.GlobalOptimizerAndLocalOptimizer method)
(gadma.optimizers.genetic_algorithm.GeneticAlgorithm method)
(gadma.optimizers.global_optimizer.GlobalOptimizer method)
(gadma.optimizers.local_optimizer.LocalOptimizer method)
(gadma.optimizers.local_optimizer.ManuallyConstrOptimizer method)
(gadma.optimizers.local_optimizer.NoneOptimizer method)
(gadma.optimizers.local_optimizer.ScipyOptimizer method)
(gadma.optimizers.optimizer.Optimizer method)
optimize_ga() (in module gadma.Inference)
,
[1]
Optimizer (class in gadma.optimizers.optimizer)
OptimizerResult (class in gadma.optimizers.optimizer_result)
P
PopulationSizeVariable (class in gadma.utils.variables)
prepare_callback() (gadma.optimizers.local_optimizer.ManuallyConstrOptimizer method)
(gadma.optimizers.local_optimizer.ScipyOptimizer method)
(gadma.optimizers.optimizer.Optimizer method)
prepare_f_for_opt() (gadma.optimizers.optimizer.Optimizer method)
print_dadi_code() (in module gadma.code_generator.dadi_generator)
print_moments_code() (in module gadma.code_generator.moments_generator)
print_runs_summary() (in module gadma.core.draw_and_generate_code)
R
randomize() (gadma.optimizers.genetic_algorithm.GeneticAlgorithm method)
(gadma.optimizers.global_optimizer.GlobalOptimizer method)
read_bootstrap_data() (gadma.cli.settings_storage.SettingsStorage method)
read_dadi_data() (in module gadma.engines.dadi_moments_common)
read_data() (gadma.cli.settings_storage.SettingsStorage method)
(gadma.engines.dadi_moments_common.DadiOrMomentsEngine class method)
(gadma.engines.engine.Engine static method)
register_engine() (in module gadma.engines.engine)
register_global_optimizer() (in module gadma.optimizers.global_optimizer)
register_local_optimizer() (in module gadma.optimizers.local_optimizer)
REPORT_FILENAME (gadma.core.core_run.CoreRun attribute)
resample() (gadma.utils.variables.Variable method)
run() (gadma.core.core_run.CoreRun method)
run_job() (in module gadma.run_ls_on_boot_data)
run_with_increase() (gadma.core.core_run.CoreRun method)
run_without_increase() (gadma.core.core_run.CoreRun method)
S
save() (gadma.optimizers.genetic_algorithm.GeneticAlgorithm method)
(gadma.optimizers.local_optimizer.NoneOptimizer method)
(gadma.optimizers.local_optimizer.ScipyOptimizer method)
(gadma.optimizers.optimizer.Optimizer method)
SAVE_FILENAME (gadma.core.core_run.CoreRun attribute)
scipy_methods (gadma.optimizers.local_optimizer.ScipyConstrOptimizer attribute)
(gadma.optimizers.local_optimizer.ScipyOptimizer attribute)
(gadma.optimizers.local_optimizer.ScipyUnconstrOptimizer attribute)
ScipyConstrOptimizer (class in gadma.optimizers.local_optimizer)
ScipyOptimizer (class in gadma.optimizers.local_optimizer)
ScipyUnconstrOptimizer (class in gadma.optimizers.local_optimizer)
selection() (gadma.optimizers.genetic_algorithm.GeneticAlgorithm method)
SelectionVariable (class in gadma.utils.variables)
set_and_evaluate() (gadma.engines.engine.Engine method)
set_data() (gadma.engines.engine.Engine method)
set_model() (gadma.engines.engine.Engine method)
SettingsStorage (class in gadma.cli.settings_storage)
SFSDataHolder (class in gadma.data.data)
SharedDict (class in gadma.core.shared_dict)
SharedDictForCoreRun (class in gadma.core.shared_dict)
sign() (gadma.optimizers.optimizer.Optimizer property)
simulate() (gadma.engines.dadi_engine.DadiEngine method)
(gadma.engines.moments_engine.MomentsEngine method)
sort_by_other_list() (in module gadma.utils.utils)
Split (class in gadma.models.event)
StdAndFileLogger (class in gadma.utils.utils)
string_repr() (gadma.models.model.Model method)
(gadma.models.variables_combinations.BinaryOperation method)
StructureDemographicModel (class in gadma.models.structure_demographic_model)
Subtraction (class in gadma.models.variables_combinations)
Sud (class in gadma.utils.variables)
supported_data (gadma.engines.dadi_engine.DadiEngine attribute)
(gadma.engines.dadi_moments_common.DadiOrMomentsEngine attribute)
(gadma.engines.engine.Engine attribute)
(gadma.engines.moments_engine.MomentsEngine attribute)
supported_models (gadma.engines.dadi_moments_common.DadiOrMomentsEngine attribute)
(gadma.engines.engine.Engine attribute)
T
test_args() (in module gadma.cli.arg_parser)
TimeVariable (class in gadma.utils.variables)
to_files() (gadma.cli.settings_storage.SettingsStorage method)
transform_values_from_other_model() (gadma.models.structure_demographic_model.StructureDemographicModel method)
translate_units() (gadma.models.demographic_model.DemographicModel method)
(gadma.utils.variables.DynamicVariable static method)
(gadma.utils.variables.FractionVariable static method)
(gadma.utils.variables.MigrationVariable static method)
(gadma.utils.variables.PopulationSizeVariable static method)
(gadma.utils.variables.SelectionVariable static method)
(gadma.utils.variables.TimeVariable static method)
trunc_lognormal() (in module gadma.utils.distributions)
trunc_lognormal_3_sigma_rule() (in module gadma.utils.distributions)
trunc_lognormal_sigma_generator() (in module gadma.utils.distributions)
trunc_normal() (in module gadma.utils.distributions)
trunc_normal_3_sigma_rule() (in module gadma.utils.distributions)
trunc_normal_sigma_generator() (in module gadma.utils.distributions)
try_to_transform() (gadma.optimizers.linear_constrain.LinearConstrain method)
U
ub() (gadma.optimizers.linear_constrain.LinearConstrain property)
UnconstrainedOptimizer (class in gadma.optimizers.optimizer)
UNDERLINE (gadma.utils.utils.bcolors attribute)
unfix_dynamics() (gadma.models.demographic_model.EpochDemographicModel method)
unfix_if_fixed() (gadma.models.model.Model method)
unfix_variable() (gadma.models.demographic_model.EpochDemographicModel method)
(gadma.models.model.Model method)
uniform_generator() (in module gadma.utils.distributions)
update_best_model_for_process() (gadma.core.shared_dict.SharedDict method)
(gadma.core.shared_dict.SharedDictForCoreRun method)
update_by_one_fifth_rule() (in module gadma.utils.utils)
update_from_file() (gadma.cli.settings_storage.SettingsStorage method)
usage() (in module gadma.cli.arg_parser)
V
valid_restore_file() (gadma.optimizers.genetic_algorithm.GeneticAlgorithm method)
(gadma.optimizers.local_optimizer.ManuallyConstrOptimizer method)
(gadma.optimizers.local_optimizer.NoneOptimizer method)
(gadma.optimizers.local_optimizer.ScipyOptimizer method)
(gadma.optimizers.optimizer.Optimizer method)
var2value() (gadma.models.model.Model method)
Variable (class in gadma.utils.variables)
VariablePool (class in gadma.utils.variable_pool)
variables() (gadma.models.model.Model property)
variables_values_repr() (in module gadma.utils.utils)
VariablesCombination (class in gadma.models.variables_combinations)
VCFDataHolder (class in gadma.data.data)
version() (in module gadma.cli.arg_parser)
W
WARNING (gadma.utils.utils.bcolors attribute)
warning_format() (in module gadma.utils.utils)
WeightedMetaArray (class in gadma.utils.utils)
wrap_for_report() (gadma.optimizers.optimizer.Optimizer method)
write() (gadma.utils.utils.StdAndFileLogger method)
write_report() (gadma.optimizers.bayesian_optimization.BayesianOptimizer method)
(gadma.optimizers.genetic_algorithm.GeneticAlgorithm method)
(gadma.optimizers.optimizer.Optimizer method)