Data (data package)¶
Base class of DataHolder¶
-
class
gadma.data.data.
DataHolder
(filename, projections, outgroup, population_labels, sequence_length)¶ Bases:
object
Class for data holding.
: param filename: name of file with data : param outgroup: information if there is outgroup in data : type outgroup: bool : params pop_labels: labels of populations in data : param seq_len: length of sequence that was used to build data
Input data types¶
-
class
gadma.data.data.
SFSDataHolder
(sfs_file, projections=None, outgroup=None, population_labels=None, sequence_length=None)¶ Bases:
gadma.data.data.DataHolder
Class for SFS data holding. if any parameter is None then it will be taken from the file
-
class
gadma.data.data.
VCFDataHolder
(vcf_file, popmap_file, sample_sizes, outgroup, population_labels=None, seq_len=None, bed_file=None)¶ Bases:
gadma.data.data.DataHolder
Class for VCF data holding.